ISRFG 2024

Sunday: 9/8/24

3-8pm Check-in & Registration: Little Rock Marriott Lobby/Reception Area

Day 1: September 9, 2024

7am-12pm Check-in & Registration

7:30-8:30am Breakfast

8:30-9:15am Welcome/Opening Remarks (Chaired by Trent Roberts)

Deacue Fields 

Nora Lapitan  

Jack Okamuro 

Rod Wing 

 

9:15-9:50am Keynote Address #1 (Chaired by Sathish Kumar Ponniah

Jan Leach: A Path to Durable Biotic and Abiotic Stress Resistance in Rice
10 min for questions 
 

 

10-10:35am Keynote Address #2 (Chaired by Rod A. Wing

Venkatesan Sundaresan: Functional genomics of rice embryo initiation and application to one-line hybrid seeds 
10 min for questions 
 

 

10:45-11:15am Break + Coffee/Tea/Snacks (30 minutes)

 

11:15-12:45pm Plenary Session #1 (Chaired by Jan Leach Yulin Jia)

11:15-11:40am Keith Glover: CEO/President of Producers Mills
5 min for questions 
 
11:45-12:10pm Rod A. Wing: The Rice Genome at 20: the Past, the Present & the Future 
5 min for questions 
 
12:15-12:40pm Pam Ronald: Engineering rice for resilience in a changing climate
5 min for questions 

 

12:45-2pm Group Photo/Lunch 

 

2-4:30pm Concurrent Sessions 

Yield – Chaired by Christian De-Guzman & Endang Septiningsih 

2-2:20pm Georgia Eizenga: Mapping Yield Related Traits in a Suite of Six Oryza rufipogon Species Complex Chromosome Segment Substitution Line Libraries in Indica and Japonica Rice Backgrounds
5 min for questions 
 
2:25-2:45pm Usha Vijayraghavan: Unravelling unequal redundancies and novel roles for rice PISTILLATA (PI) clade organ patterning genes in flowering, floral organ development and fertility
5 min for questions 
 
2:50-3:10pm Bright Gyamfi Adu: Genetic and network analysis of wild rice introgression lines with improved production under low nitrogen/nutrient conditions
5 min for questions 
 
3:15-3:20pm Short Break
 
3:20-3:40pm Jennifer Kimball: Unraveling the genetic mechanisms associated with yield-limiting seed shatter in Northern Wild Rice (Zizania palustris L.)
5 min for questions 
 
3:45-4:05pm Takeshi Izawa: Molecular mechanisms of floral repression under long-day conditions in rice
5 min for questions 
 
4:10-4:30pm Joshua Cobb: Omics approaches to yield improvement in hybrid rice
5 min for questions 

Biotic Stress – Chaired by Chih-Wei Tung & Yinong Yang

 2-2:20pm Li Wang: Receptor-ligand interactions in plant innate immunity revealed by AlphaFold protein structure prediction
5 min for questions
 
2:25-2:45pm Yulin Jia: Opportunities and Challenges of rice disease managements in the USA 
5 min for questions
 
2:50-3:10pm Sathish Ponniah: Understanding blast resistance through overexpression of Pita2 gene in rice
5 min for questions
 
3:15-3:20pm Short Break
 
3:20-3:40pm Melissa H. Jia: Characterization of the Uniform Regional Rice Nursery (URRN) for blast and quality
using molecular markers for US Rice breeding Programs
5 min for questions
 
3:45-4:05pm Federico Martin: Enhancing Resistance To Combined Stresses by Exploiting Shared Intergenic Regulatory Elements In Rice
5 min for questions
 
4:10-4:30pm General Discussion 

Rice Quality – Chaired by Shannon PinsonSiwaret Arikit 

2-2:20pm Julie Thomas: Genetic markers and transcriptome studies during grain-filling of caryopsis tissue reveal that rice chalky grain growth is controlled by numerous regulatory pathways at high night temperature
5 min for questions
 
2:25-2:45pm Michael Thomson: CRISPR-based genome editing to modify flowering time and nutritional traits in rice
5 min for questions
 
2:50-3:10pm Shannon Pinson: Improving rice milling quality by identifying and deploying loci affecting kernel fissure resistance
5 min for questions
 
3:15-3:20pm Short Break
 
3:20-3:40pm Pinky Agarwal: Two competing NAC transcription factors regulate rice grain traits 
5 min for questions
 
3:45-4:05pm Sheshshayee Sreeman: Limitation in triosephosphate utilization determines trade-off between grain protein content and yield in rice
5 min for questions
 
4:10-4:30pm General Discussion 
 

 

4:30-6:30pm Poster Session/Reception

6:30-8:30pm Dinner on your own 

 

8:30-10:30pm Workshops  

  1. Phenotypic Predictions (Chaired by Samuel Fernandes & Andy Pereira)

8:30-8:40pm Opening remarks: Samuel Fernandes

8:40-9:05pm Sunilkumar Biradar: Hybrid rice and genomic prediction: innovating for a future of food security - 5 min for questions

9:10-9:35pm Gota Morota: Quantitative genetic analysis of metabolite accumulation in rice - 5 min for questions

9:40-10:05pm Parthiban Prakash: Implementing predictive breeding to improve yield under rainfed drought environments in rice : A new hope - 5 min for questions

10:10-10:30pm General Discussion 

  1. Bioinformatics (Chaired by Yong Zhou & Jianwei Zhang

8:30-8:40pm Opening remarks: Rod A. Wing

8:40-8:50pm Jianwei Zhang: Rice genomes to riceome: an international bioinformatics initiative serving the global rice research community - 5 min for questions

8:55-9:05pm Andy Jones: PanOryza – defining high-quality gene models in rice pan-genome using new data types - 5 min for questions

9:10-9:20pm Nagarajan Kathiresan: Accelerating insights into plant genomics: the vital role of bioinformatics in high performance computing - 5 min for questions

9:25-9:35pm Xuehong Wei: Catalyzing genomic discoveries: leveraging rsIDs for enhanced trait-driven interoperability and genomic function transfer - 5 min for questions

9:40-9:50pmYong Zhou: Rice pan-genome studies: how can bioinformatics analysis be applied in field research? - 5 min for questions

9:55-10:05pm Kenneth McNally: RicePilaf: a dashboard for post-GWAS analysis (currently in press in GigaScience) - 5 min for questions

10:10-10:20pm Sushma Naithani: Plant Reactome: in silico modeling of reference rice pathways for knowledge discovery and translational research - 5 min for questions

10:25-10:30pm General Discussion 

Day 2: Sept 10, 2024

7:30-8:30am Breakfast

8:30-12:30am Plenary Session #2 (Chaired by Georgia Eizenga & Sushma Naithani)

8:30-8:55am Subhra Chakraborty: Harnessing natural variation through pan genome and pan proteome unravels the mysteries of seed quality traits in rice
5 min for questions 
 
9-9:25am Su-May Yu: Roots of drought and flooding tolerance in rice
5 min for questions 
 
9:30-9:55am Yulin Jia: Rice germplasm characterization and enhancement for the sustainability and resilience of the US rice industry using functional genomics tools
5 min for questions 
 
10-10:25am Guo-Liang Wang: The role of ubiquitination in rice immunity against Magnaporthe oryzae
5 min for questions

 

10:30-11am Break + Coffee/Tea (30 minutes) 

 

Plenary Session #2 Cont. (Chaired by Georgia Eizenga & Sushma Naithani)

11-11:25am Yinong Yang: CRISPR/Cas genome editing for rice functional genomics and trait improvement 
5 min for questions
 
11:30-11:55pm Doreen Ware: Plant genomes: understanding their past and managing their future
5 min for questions
 
12-12:25pm Sally Assmann: Computational and functional genomics approaches toward improving abiotic stress resistance in rice
5 min for questions

 

12:30-2pm Lunch

 

2-4:30pm Concurrent Sessions 

Abiotic Stress – Chaired by Benildo de los Reyes & Laura Bartley

2-2:15pm Harkamal Walia: Genome-wide identification of genotype-specific RNA splicing as the basis of differential response to salt stress in rice
5 min for questions
 
2:20-2:35pm Kusum Naithani: Using semi-mechanistic models for quantifying abiotic stress in rice
5 min for questions 
 
2:40-2:55pm Jinmi Yoon: Improving Crop Productivity by Understanding Root Development
5 min for questions 
 
3-3:15pm Isaiah Catalino M. Pabuayon: Novel Adaptive Physiology for Salinity Tolerance in Transgressive Segregants of Rice
 
3:20-3:25pm Short Break
 
3:25-3:40pm Joong Hyoun Chin: Adaptation of Tropical Rice to Temperate Climates: Efficacy of Multi-Stress Tolerant Indica Varieties in Reclaimed Regions of Korea
5 min for questions 
 
3:45-4pm Endang Septiningsih: Toward introgression and molecular dissection of QTLs for tolerance of flooding during germination in rice
5 min for questions 
 
4:05-4:20pm Ai Kitazumi: Genomic and epigenomic underpinnings of a novel and non-parental stress-adaptive phenotype created by transgressive segregation
5 min for questions 
 
4:25-4:30pm General Discussion 

Sustainability –  Chaired by Alice Fornasiero Jai Rohila 

2-2:15pm Lizhong Xiong: A novel RNA binding protein enhances drought resistance by promoting stress mRNA stability via protein phase separation in rice 
5 min for questions 
 
2:20-2:35pm Michael Schlappi: Navigating rice seedling cold resilience: QTL mapping in three inbred line populations and the search for genes 
5 min for questions 
 
2:40-2:55pm Jai Rohila: Aus sub-population of Oryza sativa L.: a unique source for improving rice sustainability and climate resiliency related traits in elite US rice varieties 
5 min for questions 
 
3-3:15pm Antonio Costa de Oliveira: IOMAP Americas: the Amazon Mission
5 min for questions 
 
3:20-3:25pm Short Break
 
3:25-3:40pm Jitender Giri: OsDGD1 maintains the metabolic flux for jasmonate biosynthesis and root development to regulate phosphate homeostasis
5 min for questions 
 
3:45-4pm Niranjan Baisakh: Marker-Trait Associations for Cold Tolerance in Rice at Various Growth Stages 
5 min for questions 
 
4:05-4:20pm Trevis Huggins: Development, Gene Discovery and Allele Mining of a Global Tropical Japonica Core Collection
5 min for questions 
 

4:25-4:30pm General Discussion 


Comparative Genomics & Technology – Chaired by Jeremy Edwards Pao-Yang Chen 

2-2:15pm Hong Ma: Genome evolution in rice and other grasses and possible impact of gene duplications on adaptation of rice to growth in aquatic habitats
5 min for questions 
 
2:20-2:35pm Jeremy Edwards: Local ancestry inference and cryptic introgressions with examples in US breeding lines
5 min for questions 
 
2:40-2:55pm Anthony Greenberg: Inter-chromosomal linkage disequilibrium across rice populations
5 min for questions 
 
3-3:15pm Dong-Hong Wu: Genetic mapping and transcriptome analysis of seed longevity in Taiwan weedy rice
5 min for questions 
 
3:20-3:25pm Short Break
 
3:25-3:40pm Wladimir Tameling: Enhancing rice grain yield through functional genomics and advanced breeding techniques
5 min for questions 
 
3:45-4pm Laura Bartley: Multi-omics of the elongating rice internode suggests multiple regulatory mechanisms for cell wall synthesis
5 min for questions 
 
4:05-4:20pm Mathias Lorieux: New insights on the influence of genomic structural variation on crossover occurrence
5 min for questions 
 
4:25-4:30 General Discussion 
 
 

4:30-6:30pm Poster Session/Reception

6:30-8:30pm Dinner on your own 

 

8:30-10:30pm Workshops

  1.  Gene Editing – (Chaired by Bing Yang

    8:30 - 9:15pm Bing Yang: CRISPR-based genome editing in plants: principal and methodology - 5 min for questions

    9:20 - 9:45 Nelson Saibo: CRISPR: A useful tool to characterize the function of different genes in rice and beyond - 5 min for questions

    9:50 - 10:15pm Flavia Botelho: Targeted mutagenesis of the V-PPase gene reduces grain chalkiness in rice - 5 min for questions

    10:15-10:30pm General Discussion 

  2.  High Throughput Phenotyping – (Chaired by Argelia LorenceHarkamal Walia)

    8:30 - 9:05pm Harkamal Walia: Rice panicle phenotyping - 5 min for questions

    9:10-9:45pm Alexander Bucksch: Root phenotyping - 5 min for questions

    9:50-10:25 Argelia Lorence: Rice field phenotyping - 5 min for questions

    10:25-10:30pm General Discussion 

Day 3: Sept 11, 2024- Lonoke/Stuttgart

7:30-8:30am Breakfast

8:30am Meet in the Marriott Hotel lobby

9:10am Isbell Farm Tour – Lonoke http://isbellfarms.com/

11:10am arrival to Stuttgart, AR

11:10-12:10pm PCCUA

12:10-2pm Stuttgart Lunch- Arkansas Style, Phillips Community College, https://www.pccua.edu, Phillips Community College of the University of Arkansas (PCCUA)

 

Young Scientist Award Talks (Chaired by Alton Johnson

Opening Remarks: Pankaj Jaiswal

12:30-12:40pm Anil Kumar Nalini Chandran: Phenotypic and transcriptomic response of diverse rice accessions to transient heat stress during early grain development

12:40-12:50pm Alice Fornasiero: Oryza genome evolution through a tetraploid lens

12:50-1pm Alexander Borowsky: Heterogeneity in rice cell type responses to water deficit across the root system

1-1:10pm Fei-Man Hsu: Genome-wide DNA methylation perturbations in rice regeneration

1:10-1:20pm Daniele Chirivi: New details on OsFTL1 florigenic protein revealed by Proximity Labelling in rice

1:20-1:30pm Syed Adeel Zafar: Deciphering gene regulatory networks controlling root xylem plasticity under drought

1:30-1:40pm Maria Florencia Ercoli: Engineering rice root system architecture and exudate composition to optimize rhizosphere interactions

1:40-1:50pm Shohei Oguro: Genome-wide identification of genotype-specific RNA splicing for salt stress response in rice

 

2:30-5pm  Tour of Dale Bumpers National Rice Research Center

2:30-3:00pm  Check-in 
3:00-3:30pm  Introduction and rice tasting – Yulin Jia 
3:30-4:40pm Tour of DBNRRC which includes 10 min rotations with center personnel explaining the following research activities:
Rice grain quality - Shannon Pinson
Abiotic stress tolerance - Jai Rohila
Plant Pathology - Yulin Jia
Diverse rice species - Georgia Eizenga
Genomics core facility - Jeremy Edwards
US rice germplasm collection - Trevis Huggins
Seed processing activities - Laduska Sells

5-6pm Tour of University of Arkansas Rice Research and Extension Center/ Field plot experiment for breeding and crop protection

5:00-5:20pm Observation Plots University of Arkansas
5:20-5:40pm Climate Change/ Germplasm USDA - Dale Bumpers NRRC
5:40-6:00pm Rice/Fish Experiment DB NRRC and SNARC

 

6:30-8:30pm Banquet Dinner + Speaker Award Ceremony (Chaired by Yulin Jia & Rod A. Wing)

Chris Isbell: Dreams of a rice farmer in Arkansas, USA

Hallie Shoffner: Scalable production of rice varietals and the economic future for rice farmers 

 

Announcement of ISRFG2025 and Concluding Remarks